Fit Token-OT Graph alignment on a pair of domains

Usage

# S3 method for class 'token_ot_graph_aligner'
fit_pair(
  algo,
  X_i,
  X_j,
  links = NULL,
  ncomp = 20L,
  control = token_ot_graph_align_control(),
  ...
)

Arguments

algo: A token_ot_graph_aligner object.
X_i: First domain data matrix (nodes x features).
X_j: Second domain data matrix (nodes x features).
links: Optional anchor links. Accepts either list(vec1=, vec2=) or list(v1, v2), where shared values indicate anchors and NAs denote unknowns.
ncomp: Latent dimension used for baseline embeddings (default: 20).
control: Control settings from token_ot_graph_align_control().
...: Additional arguments (unused).

Value

An object of class token_ot_graph_pair_fit with fields transport (sparse coupling), assignment, objective, and dimensions.