Articles

Start Here

Core orientation and backend choice before task-specific workflows

Overview: Getting Started with neuroim2

Coordinate Systems and Spatial Transforms

Choosing a Backend

Working with 4D NeuroVectors (NeuroVec)

Spatial Workflows

Reading, transforming, and resampling volumetric data

Working with 3D Image Volumes

Resampling, downsampling, and reorientation

Smoothing and filtering with neuroim2

Regions and Searchlights

ROI construction, clustered representations, and searchlight analysis

Regions of Interest (ROI)

ClusteredNeuroVec: Parcel-based 4D Analysis

Pipelines: Split, Map, and Reduce

Visualization

Slice and montage visualization workflows

Slice visualization with neuroim2

Cookbook

Small, task-oriented examples and recipes

neuroim2 Cookbook