Returns currently known cross-representation alignment routes and their implementation status.
Usage
atlas_transform_manifest(scope = c("alignment", "space"))Value
A data frame manifest. For `scope = "alignment"` this is a tibble of atlas-family representation routes. For `scope = "space"` this is the space transform registry returned by [space_transform_manifest()].
Examples
# Atlas-family alignment routes
atlas_transform_manifest("alignment")
#> # A tibble: 6 × 9
#> family model from_representation to_representation relation method confidence
#> <chr> <chr> <chr> <chr> <chr> <chr> <chr>
#> 1 schaef… Scha… volume surface same_mo… volum… approxima…
#> 2 schaef… Scha… surface volume same_mo… surfa… approxima…
#> 3 glasser HCP-… volume surface same_mo… volum… uncertain
#> 4 glasser HCP-… surface volume same_mo… surfa… uncertain
#> 5 subcor… CIT1… volume volume same_mo… resam… approxima…
#> 6 subcor… CIT1… volume volume same_mo… resam… approxima…
#> # ℹ 2 more variables: status <chr>, notes <chr>
# Space-to-space routes
atlas_transform_manifest("space")
#> from_space to_space transform_type backend
#> 1 MNI305 MNI152 affine internal_affine
#> 2 MNI152 MNI305 affine internal_affine
#> 3 MNI152NLin6Asym MNI152NLin2009cAsym nonlinear_warp templateflow_ants
#> 4 MNI152NLin2009cAsym MNI152NLin6Asym nonlinear_warp templateflow_ants
#> 5 fsaverage fsaverage6 sphere_resample sphere_nn
#> 6 fsaverage6 fsaverage sphere_resample sphere_nn
#> 7 fsaverage fsaverage5 sphere_resample sphere_nn
#> 8 fsaverage5 fsaverage sphere_resample sphere_nn
#> 9 fsaverage fsLR_32k sphere_resample workbench
#> 10 fsLR_32k fsaverage sphere_resample workbench
#> 11 MNI152NLin2009cAsym fsaverage vol2surf neurosurf
#> 12 fsaverage MNI152NLin2009cAsym surf2vol ribbon_fill
#> confidence reversible
#> 1 exact TRUE
#> 2 exact TRUE
#> 3 high TRUE
#> 4 high TRUE
#> 5 exact TRUE
#> 6 exact TRUE
#> 7 exact TRUE
#> 8 exact TRUE
#> 9 high TRUE
#> 10 high TRUE
#> 11 approximate FALSE
#> 12 approximate FALSE
#> data_files status
#> 1 <NA> available
#> 2 <NA> available
#> 3 from-MNI152NLin6Asym_to-MNI152NLin2009cAsym_mode-image_xfm.h5 planned
#> 4 from-MNI152NLin2009cAsym_to-MNI152NLin6Asym_mode-image_xfm.h5 planned
#> 5 fsaverage/surf/?h.sphere.reg available
#> 6 fsaverage/surf/?h.sphere.reg available
#> 7 fsaverage/surf/?h.sphere.reg available
#> 8 fsaverage/surf/?h.sphere.reg available
#> 9 fs_LR-deformed_to-fsaverage.?H.sphere.reg.surf.gii planned
#> 10 fsaverage_to-fs_LR.?H.sphere.reg.surf.gii planned
#> 11 <NA> planned
#> 12 <NA> planned
#> notes
#> 1 FreeSurfer mni152.register.dat
#> 2 Inverse of FreeSurfer mni152.register.dat
#> 3 TemplateFlow composite warp
#> 4 TemplateFlow composite warp inverse
#> 5 Downsample 164k to 41k on registration sphere
#> 6 Upsample 41k to 164k on registration sphere
#> 7 Downsample 164k to 10k on registration sphere
#> 8 Upsample 10k to 164k on registration sphere
#> 9 HCP sphere registration via Workbench
#> 10 HCP sphere registration via Workbench
#> 11 Requires white and pial surfaces
#> 12 Requires ribbon mask construction