Package index • neuroatlas

All functions

MNI152_to_MNI305: MNI152 to MNI305 Affine Transform Matrix
MNI305_to_MNI152: MNI305 to MNI152 Affine Transform Matrix
as_igraph(): Convert Atlas Connectivity to igraph
as_parcel_data(): Convert an Object to `parcel_data`
atlas_alignment(): Atlas Alignment Lookup
atlas_connectivity(): Compute Connectivity Matrix from Atlas Parcellations
atlas_coord_space(): Atlas Coordinate-Space Convenience Accessor
atlas_family(): Atlas Family Convenience Accessor
atlas_graph(): Compute Parcel Adjacency Graph from an Atlas
atlas_hierarchy(): Atlas Hierarchy
atlas_overlap(): Cross-Atlas Overlap Analysis
atlas_ref(): Atlas Reference Accessor
atlas_roi_colors(): Assign optimal colours to atlas regions
atlas_space(): Atlas Template-Space Convenience Accessor
atlas_transform_manifest(): Atlas Transform Manifest
atlas_transform_plan(): Plan a Transform Between Spaces
batch_reduce(): Batch Reduce Multiple Volumes by an Atlas
build_brain_polygon_data(): Build brain polygon render data for a surface atlas
build_cluster_explorer_data(): Build Cluster Explorer Data
build_conflict_edges(): Build slice-aware conflict edges between ROIs
build_surface_polygon_data(): Build Surface Polygon Data for Rendering
check_templateflow(): Check TemplateFlow Installation Status
clear_templateflow_cache(): Clear neuroatlas TemplateFlow Cache
cluster_explorer(): Launch Cluster Explorer Shiny App
coord_spaces: Standard Coordinate Space Identifiers
coordinate_spaces: Coordinate Space Transforms for Neuroimaging Templates
create_templateflow(): Create a TemplateFlow Interface Object
dilate_atlas(): Dilate Atlas Parcellation Boundaries
filter_atlas(): Filter Atlas by ROI Attributes
fsaverage: Surface geometry for the fsaverage6 atlas
get_aseg_atlas(): Get the FreeSurfer Subcortical Atlas (ASEG)
get_ggseg_atlas(): Get ggseg-Compatible Schaefer Atlas
get_glasser_atlas(): Load Glasser Atlas
get_hipp_atlas(): Extract Hippocampal Parcellation
get_olsen_mtl(): Load Olsen MTL Atlas
get_roi(): Extract a region of interest (ROI) from an atlas
get_schaefer_atlas() sy_100_7() sy_100_17() sy_200_7() sy_200_17() sy_300_7() sy_300_17() sy_400_7() sy_400_17() sy_500_7() sy_500_17() sy_600_7() sy_600_17() sy_700_7() sy_700_17() sy_800_7() sy_800_17() sy_900_7() sy_900_17() sy_1000_7() sy_1000_17(): Load Schaefer Brain Parcellation Atlas
get_schaefer_surfatlas(): Load Surface-Based Schaefer Atlas
get_space_transform(): Get Transform Matrix Between Coordinate Spaces
get_subcortical_atlas(): Load harmonized subcortical atlases via TemplateFlow
get_surface_coordinate_space(): Get Coordinate Space for a Surface Template
get_template() get_surface_template(): Fetch a Template from TemplateFlow
ggseg_schaefer(): Create Interactive Schaefer Atlas Visualization
glasser_surf(): Glasser Surface Atlas (fsaverage)
`%where%`: Filter Atlas with Infix Operator
infer_design_var_type(): Infer Design Variable Type
install_templateflow(): Install Templateflow (DEPRECATED)
launch_cluster_explorer(): Launch Cluster Explorer in Interactive Session
load_surface_template(): Load a surface template as a neurosurf geometry
map_atlas(): Map values to an atlas
map_to_schaefer(): Map Values to Schaefer Atlas Format
merge_atlases(): Merge Two Brain Atlases
needs_coord_transform(): Check if a Coordinate Transform is Needed
needs_template_warp(): Check if a Nonlinear Template Warp is Needed
needs_transform(): Check if Transform is Needed Between Spaces
network_anchor_hues(): Assign harmonic anchor hues to networks
new_atlas_ref(): Atlas Reference Metadata
olsen_mtl: Olsen Medial Temporal Lobe Atlas
parcel_data(): Parcel-Level Data Container
parcel_values(): Extract Parcel Values Aligned to an Atlas
plot(<atlas>) plot(<glasser>) plot(<surfatlas>): Plot Glasser Atlas
plot_brain(): Plot Brain Surface Atlas
plot_brain_grid(): Multi-panel Brain Plot Grid
plot_glasser(): Plot Glasser Atlas Values
print(<atlas>) print(<glasser>) print(<schaefer>): Print Methods for neuroatlas Objects
print(<atlas_alignment>): Print Method for Atlas Alignment Results
print(<atlas_ref>): Print Method for Atlas References
print(<atlas_transform_plan>): Print Method for Transform Plans
print(<templateflow>): Print a TemplateFlow Object
project_surface_view(): Project Surface Vertices to a Canonical 2D View
query_point(): Look Up Atlas Regions at MNI Coordinates
read_parcel_data(): Read a `parcel_data` Object from Disk
reduce_atlas(): Reduce a NeuroVol or NeuroVec by an Atlas
reduce_atlas_vec(): Reduce a NeuroVec by an Atlas to a ClusteredNeuroVec
resample(): Resample Volume to New Space
roi_attributes(): List Available ROI Attributes
roi_colors_embedding(): Embedding-based palette with smooth gradients
roi_colors_maximin_view(): Slice-aware maximin palette for ROIs
roi_colors_network_harmony(): Network-harmonic palette with neighbour separation
roi_colors_rule_hcl(): Deterministic HCL palette with harmonic variation
roi_metadata(): ROI Metadata Functions
schaefer_surf(): Schaefer Surface Atlas
schaefer_surf_options(): List supported Schaefer surface atlas variants
show_templateflow_cache_path(): Show neuroatlas TemplateFlow Cache Path
space_transform_manifest(): Space Transform Manifest
spin_test(): Spin Test for Spatial Correlation Significance
sub_atlas(): Select a Subset of Atlas Regions
subcortical_atlas_options(): Subcortical Atlas Options (TemplateFlow-backed)
template_to_coord_space(): Get Coordinate Space for Any Template
tflow_files(): Find TemplateFlow Files Matching Metadata Criteria
tflow_spaces(): List Available TemplateFlow Template Spaces
transform_coords(): Transform Coordinates Between Spaces
transform_vertices_to_volume(): Transform Surface Vertices to Volume Space
validate_atlas_ref(): Validate an Atlas Reference
validate_parcel_data(): Validate a Parcel-Level Data Object
write_parcel_data(): Write a `parcel_data` Object to Disk