Run an afni_lm_spec object — run.afni_lm

This function runs the 3dDeconvolve command for the specified afni_lm_spec object. It outputs the results to a specified directory and can either execute the command or only output the shell '3dDeconvolve.sh' script.

Usage

# S3 method for afni_lm_spec
run(x, outdir, execute = TRUE, execfun = system, prepend = "", ...)

Arguments

x: An afni_lm_spec object containing the model, dataset, and options
outdir: The output folder
execute: Whether to execute the command or only output the shell '3dDeconvolve.sh' script (default is TRUE)
execfun: Function used to execute external system command (default is system)
prepend: Prepend string to command (default is an empty string)
...: Additional arguments passed to execfun

Value

NULL. The function is used for its side effects, such as writing output files.

Examples

# Assuming you have created an afni_lm_spec object called alm
run.afni_lm_spec(alm, outdir="results")
#> Error in run.afni_lm_spec(alm, outdir = "results"): could not find function "run.afni_lm_spec"