Plot Glasser Atlas — plot.atlas • neuroatlas

Creates an interactive visualization of the Glasser atlas with mapped values using ggseg and ggiraph.

Plot methods for various atlas objects in the neuroatlas package

Usage

# S3 method for class 'atlas'
plot(x, y, ...)

# S3 method for class 'glasser'
plot(
  x,
  y,
  vals = NULL,
  thresh = c(0, 0),
  pos = FALSE,
  position = "stacked",
  colour = "gray",
  guide = TRUE,
  palette = "cork",
  lim = NULL,
  ...
)

Arguments

x: An atlas object (atlas, glasser, schaefer, etc.)
y: Ignored (required for S3 consistency)
...: Additional arguments passed to specific plot implementations
vals: Numeric vector of values to visualize. If NULL (default), all regions will be assigned a value of 1, creating a uniform visualization
thresh: Numeric vector of length 2 for thresholding values
pos: Logical. If TRUE, uses raw values for thresholding
position: Character. Layout type ("stacked" or "dispersed")
colour: Character. Border color for regions
guide: Logical. Whether to show color guide
palette: Character. Name of scico color palette
lim: Numeric vector of length 2 for color scale limits. If NULL, will be set to range of vals

Value

A ggiraph interactive plot object

A plot object (specific type depends on the atlas)