Summarize a Pipeline Output Root

Reads and validates a CLI pipeline output directory, returning a structured summary of the first-level outputs found there.

Usage

pipeline_attach_summary(root, remap = NULL)

Arguments

root

Path to the pipeline output root directory (the folder containing firstlevel/, pls/, etc.).

remap

Optional alternative root for resolving relative paths. Use when the output directory has been moved from its original location. If NULL (default), paths are resolved against root.

Value

A list with components:

root

The output root path.

valid

Logical; TRUE if the output root is usable.

errors

Character vector of validation errors (empty if valid).

firstlevel_plan

First-level work plan data.frame.

firstlevel_manifest

Consolidated first-level manifest data.frame.

discovery_manifest

Discovery manifest data.frame, or NULL.

summary

Named list with n_subjects, n_groups, groups, types, statistics, etc.