neuroimjs API
Enumerations
Classes
- NeuroAtlas
- SliceCoordinator
- ColorMap
- ColorMapFactory
- CoordinateTransformer
- DepthEnhancedLayer
- ImageLayer
- ImageSlice
- OrientationLabelLayer
- OrthogonalImageViewer
- SimpleOrthogonalViewer
- SingleSliceViewer
- SliceController
- SliceModel
- SliceView
- SliceViewer
- ViewSynchronizer
- ViewerFactory
- VolLayer
- VolStack
- Logger
- NeuroimError
ValueError- NeuroimTypeError
- NotImplementedError
- IOError
- NamedAxis
- AxisSet
- AxisSet1D
- AxisSet2D
- AxisSet3D
- NeuroSpace
- DenseNeuroHyperVec
- FileFormat
- NIFTIFormat
- NIFTIDualFormat
- AFNIFormat
- Resampler
- OverlayReviewSession
- OverlaySummaryService
- ConnectedComponents
- ROI
- ROICoords
- ROIVol
- ROIVolWindow
- ROIVec
- ROIVecWindow
- SparseNeuroVol
- Kernel3D
- SpatialFilter
- SliceAccessError
- LazyList
- EnhancedDenseNeuroVec
- EnhancedFloat32NeuroVec
- FileBackedNeuroVec
- MappedNeuroVec
- DenseNeuroVec
- Float32NeuroVec
- Int16NeuroVec
- Uint8NeuroVec
- Float64NeuroVec
- SparseNeuroVec
- BigNeuroVec
- ClusteredNeuroVol
- DenseNeuroVol
- FloatNeuroVol
- Int16NeuroVol
- UInt8NeuroVol
- Int8NeuroVol
- Float64NeuroVol
- Int32NeuroVol
- UInt16NeuroVol
- LogicalNeuroVol
- NeuroSlice
- VoxelIterator
Interfaces
- AtlasMetadata
- SchaeferAtlasOptions
- GlasserAtlasOptions
- ColorMapOptions
- PresetConfig
- ValidationResult
- ValidationOptions
- CrossHairOptions
- DepthEnhancedOptions
- BoundingBox
- OrientationLabelOptions
- OrthogonalImageViewerOptions
- OrthogonalImageViewerParams
- PointMarker
- PointMarkerOptions
- SimpleOrthogonalViewerOptions
- SingleSliceViewerEvents
- SingleSliceViewerOptions
- SliceLayer
- ScreenLayoutContext
- SliceViewOptions
- ViewSynchronizerOptions
- ViewerStateInfo
- ViewerTheme
- AlignmentManagerOptions
- AlignmentResult
- AlignmentOptions
- IAlignmentStrategy
- ICoordinateTransformer
- ISliceController
- ISliceModel
- ISliceView
- LogEntry
- LoggerOptions
- CategoryLogger
- LayerUpdateParams
- SlicePointerEvent
- ViewerUpdateParams
- NeuroimErrorOptions
- ValueErrorOptions
- VolumeGeometry
- DimensionInfo
- NeuroHyperVecOptions
- ReductionOptions
- FeatureExtractionOptions
- INeuroHyperVec
- ReadVolOptions
- WriteVolOptions
- HeaderInfo
- ResampleOptions
- TransformOptions
- IResampler
- SubjectInfo
- OverlayReviewContrast
- OverlayReviewDataset
- ValidatedOverlayReviewContrast
- ValidatedOverlayReviewDataset
- OverlayReviewSessionOptions
- OverlaySummaryServiceOptions
- SufficientStats
- ConsistencyOptions
- Cluster
- ConnectedComponentsResult
- ClusterTableEntry
- SearchlightOptions
- SpaceMember
- SpaceDataset
- SpaceState
- SpaceStateChangeEvent
- SpaceStatusChangeEvent
- SpaceErrorEvent
- SpaceEventMap
- SpaceHandle
- MountSpaceOptions
- Kernel3DLike
- BilateralFilterOptions
- GuidedFilterOptions
- ISpatialFilter
- MetaInfo
- SparseData
- MemoryMappedOptions
- ParallelOptions
- SliceAccessConfig
- SliceAccessResult
- VolumeSliceDimensions
- SliceExtractionParams
- VolumeCompatibilityResult
- ScatterPoint
- ScatterFieldOptions
- ScatterFieldResult
- ScatterFieldSpaceMetadata
- ScatterFieldWorkerRequest
- ScatterFieldMessage
- RandomOptions
- TemporalFilter
- INeuroVec
- NeuroVecOptions
- MappedNeuroVecOptions
- NeuroVec
- LabelMap
- ClusterInfo
- NeuroVol
- VoxelItResult
Type Aliases
- Color
- ColorMapEvents
- NumericTypedArray
- LayoutMode
- ViewerOptions
- SliceInterpolation
- AlignmentStrategyType
- LogLevelName
- PointerEventHandler
- NeuroimErrorCode
- ReductionOp
- InterpolationMethod
- ReviewNeuroVec
- StatisticalNeuroVec
- PairedDifferenceNeuroVec
- OverlaySummaryCachePolicy
- RandomSearchlightOptions
- SpaceMode
- SpaceStatistic
- SpaceOrientation
- SpaceStatus
- SpaceStatePatch
- MorphOperation
- TypedArray
- NumericType
- SliceTypedArrayType
- Range
- Threshold
- RGB
- RGBA
- Point3D
- Point4D
- VoxelCoord
- VoxelCoord4D
- RealCoord
- RealCoord4D
- Shape3D
- Shape4D
- Spacing3D
- Spacing4D
- Origin3D
- Origin4D
- Matrix3x3
- Matrix4x4
- AffineMatrix
- ROIType
- StatMethod
- Nullable
- Optional
- AsyncResult
- NumericArray
- DataArray
- AxisName
- AxisDirection
- AxisSpec
- ScatterKernelParameters
- ScatterKernel
- Rng
- DetrendMethod
Variables
- GLASSER_DEFAULT_COLOR_SEED
- DEFAULT_LOG_LEVEL
- NEUROIM_ERROR_CODES
- AXIAL_LPI
- CORONAL_LIP
- SAGITTAL_AIL
- SPACE_PROTOCOL_VERSION
- SPACE_PACKAGE_VERSION
- StatFunctions
Functions
- toInt32Labels
- parseLogLevel
- setLogLevel
- getLogLevel
- enableDebugLogging
- enableConsoleLogging
- isNeuroimError
- extractSliceForView
- getSliceAxisIndex
- getMaxSliceIndex
- isValidSliceIndex
- getSliceAxisName
- getCenterSliceIndex
- getSafeSliceIndicesForSpaces
- getVolumeGeometry
- assertSameVolumeGeometry
- createNeuroHyperVec
- findDescriptor
- getFormat
- readVol
- writeVol
- readHeader
- readVolList
- readVec
- writeVec
- read_vol
- write_vol
- addResamplingToNeuroVol
- createReviewVecFromVolumes
- validateOverlayReviewDataset
- computeSufficientStats
- subtractVolumeFromStats
- subtractSubjectFromStats
- meanVolume
- standardDeviationVolume
- effectVolume
- oneSampleTVolume
- differenceOfMeansVolume
- welchTVolume
- pairedDifferenceVec
- pairedDifferenceStats
- pairedDifferenceMeanVolume
- pairedDifferenceEffectVolume
- pairedDifferenceTVolume
- consistencyVolume
- clusterTable
- localMaxima
- sphericalROI
- cuboidROI
- squareROI
- roiFromMask
- roiFromIndices
- roiFromCoords
- searchlightIterator
- searchlightCoords
- randomSearchlight
- clusteredSearchlight
- bootstrapSearchlight
- mountSpace
- addSpatialFilteringToNeuroVol
- splitBlocks
- splitClusters
- splitFill
- splitReduce
- splitScale
- partition
- mapValues
- centroids
- concat
- series
- scaleSeries
- isTypedArray
- isNumericType
- getTypedArrayConstructor
- getNumericType
- buildScatterField
- createRng
- bigNeuroVecSeq
- clusteredNeuroVol
- createNeuroSlice
- createNeuroVol
- addVol
- subtractVol
- multiplyVol
- divideVol
- greaterThan
- lessThan
- equalTo
- negateVol
- absVol
- sqrtVol
- sumVol
- meanVol
- minVol
- maxVol
- mapVol
- extractOrthogonalSlices
- extractAxialSlice
- extractSagittalSlice
- extractCoronalSlice
- getSliceOrientation
- getWorldBoundsForSlice