Skip to contents

Subcortical Atlas Options (TemplateFlow-backed)

Source: R/subcortical_atlases.R
subcortical_atlas_options.Rd

Returns a tibble describing the supported subcortical atlases built and harmonized by the AtlasPack resource (HCP thalamus, MDTB10 cerebellum, CIT168 subcortex, and HCP hippocampus/amygdala). Each row includes the TemplateFlow atlas identifier, supported template spaces, and default resolution/desc parameters used to fetch the data.

Usage

subcortical_atlas_options()

Value

A tibble with columns:

  • id: canonical neuroatlas identifier

  • atlas: TemplateFlow atlas field

  • label: human-readable name

  • default_space: default TemplateFlow space

  • spaces: list-column of allowed spaces

  • default_resolution: default TemplateFlow resolution string

  • resolutions: list-column of allowed resolutions

  • default_desc: optional TemplateFlow desc value

References

1. AtlasPack resource for harmonized atlases: https://github.com/PennLINC/AtlasPack 2. Najdenovska E. et al. (2018) Scientific Data, HCP thalamus. 3. King M. et al. (2019) Nature Neuroscience, MDTB10 cerebellum. 4. Pauli W.M. et al. (2018) Scientific Data, CIT168 subcortex. 5. Glasser M.F. et al. (2013) Neuroimage, HCP subcortical structures.

Examples

opts <- subcortical_atlas_options()
opts
#> # A tibble: 4 × 8
#>   id           atlas   label default_space spaces default_resolution resolutions
#>   <chr>        <chr>   <chr> <chr>         <list> <chr>              <list>     
#> 1 cit168       CIT168  CIT1… MNI152NLin6A… <chr>  01                 <chr [1]>  
#> 2 hcp_thalamus hcptha… HCP … MNI152NLin6A… <chr>  01                 <chr [1]>  
#> 3 mdtb10       MDTB10  MDTB… MNI152NLin6A… <chr>  01                 <chr [1]>  
#> 4 hcp_hippamyg HPandA… HCP … MNI152NLin6A… <chr>  01                 <chr [2]>  
#> # ℹ 1 more variable: default_desc <chr>