Loads Harvard-Oxford cortical, subcortical, or combined cortical/subcortical parcellations. By default this uses TemplateFlow, which does not require a local FSL installation. Set `source = "fsl"` to read from `$FSLDIR`.
Usage
get_harvard_oxford_atlas(
type = c("cortical", "subcortical", "cortical_subcortical"),
threshold = c(25, 0, 50),
template_space = "MNI152NLin6Asym",
resolution = "01",
source = c("templateflow", "fsl"),
outspace = NULL,
use_cache = TRUE,
path_only = FALSE
)
get_harvard_oxford_cortical_atlas(...)
get_harvard_oxford_subcortical_atlas(...)
get_harvard_oxford_cortical_subcortical_atlas(...)Arguments
- type
One of `"cortical"`, `"subcortical"`, or `"cortical_subcortical"`.
- threshold
Maximum-probability threshold, one of `0`, `25`, or `50`.
- template_space
TemplateFlow space.
- resolution
TemplateFlow/FSL resolution. TemplateFlow accepts `"01"` or `"02"`; FSL accepts values such as `"1mm"` and `"2mm"`.
- source
`"templateflow"` or `"fsl"`.
- outspace
Optional `NeuroSpace` to resample the atlas into.
- use_cache
Passed through to `get_template()`.
- path_only
Return resolved paths and metadata without loading image data.
- download
Logical; for `get_julich_brain_atlas()`, download the Julich-Brain atlas archive into the neuroatlas cache when `fsl_dir` is unset.