Package index • afnireg

All functions

AFNI_HRF(): AFNI HRF Specifications

afni_hrf(): construct an native AFNI hrf specification for '3dDeconvolve' with the 'stim_times' argument.

afni_lm(): create an afni_lm spec

afni_lm_spec(): afni_lm_spec constructor

afni_trialwise(): construct a native AFNI hrf specification for '3dDeconvolve' and individually modulated events using the 'stim_times_IM' argument.

afnireg-package afnireg: afnireg: AFNI Integration for fMRI Analysis in R

build_afni_stims(): Build AFNI Stimulus Files

cells(<afni_hrf_convolved_term>): Get cells for afni_hrf_convolved_term

conditions(<afni_hrf_convolved_term>): Extract Conditions from AFNI Convolved Terms

construct(<afni_hrfspec>): Construct Methods for AFNI HRF Specifications

construct(<afni_trialwise_hrfspec>): Construct an afni_trialwise_convolved_term from an afni_trialwise_hrfspec

contrast_weights(<event_model>): Contrast weights for event models with AFNI terms

design_matrix(<afni_hrf_convolved_term>): Extract Design Matrix from AFNI Convolved Terms

.onLoad(): Package Loading Hook

gen_afni_lm(): Generate AFNI Linear Model

is_afni_convolved_term(): Check if an Object is an AFNI Convolved Term

is_continuous(<afni_hrf_convolved_term>): Check if AFNI Term is Continuous

nbasis(<afni_hrf_convolved_term>): Get Number of Basis Functions for AFNI Terms

nbasis(<event_term>): Get Number of Basis Functions for Event Terms

print(<afni_hrf_convolved_term>) print(<afni_trialwise_convolved_term>): AFNI-specific Convolved Term Classes

print(<afni_lm_spec>): Print method for afni_lm_spec

requires_external_processing(): Check if a Term Requires External Processing

run(): Generic run function

run(<afni_lm_spec>): Run AFNI Linear Model Specification

shortnames(<afni_hrf_convolved_term>): Get Short Names for AFNI Terms

to_glt(): Convert to AFNI GLT

to_glt(<contrast>): AFNI Contrast Functions