Use FSL img2imgcoord <http://fsl.fmrib.ox.ac.uk/fsl/fsl-4.1.9/flirt/overview.html>_
Usage
ni_fsl_warp_points(
dest_file,
in_coords,
src_file,
args = NULL,
coord_mm = NULL,
coord_vox = NULL,
warp_file = NULL,
xfm_file = NULL,
.cwd = NULL,
.env = NULL,
.engine = NULL,
.profile = NULL,
dry_run = FALSE,
echo = interactive()
)Arguments
- dest_file
Character; file path. filename of destination image Required.
- in_coords
Character; file path. filename of file containing coordinates Required.
- src_file
Character; file path. filename of source image Required.
- args
Character. Additional parameters to the command
- coord_mm
Logical. all coordinates in mm
- coord_vox
Logical. all coordinates in voxels - default
- warp_file
Character; file path. filename of warpfield (e.g. intermediate2dest_warp.nii.gz)
- xfm_file
Character; file path. filename of affine transform (e.g. source2dest.mat)
- .cwd
Working directory override.
- .env
Named character vector of environment variables.
- .engine
Execution engine override.
- .profile
Runtime profile override.
- dry_run
Logical; preview command without executing.
- echo
Logical; echo stdout/stderr in real time.