Automatically crops an image removing lower head and neck.
Usage
ni_fsl_robust_fov(
in_file,
args = NULL,
brainsize = NULL,
out_roi = NULL,
out_transform = NULL,
.cwd = NULL,
.env = NULL,
.engine = NULL,
.profile = NULL,
dry_run = FALSE,
echo = interactive()
)Arguments
- in_file
Character; file path. input filename Required.
- args
Character. Additional parameters to the command
- brainsize
Integer. size of brain in z-dimension (default 170mm/150mm)
- out_roi
Character; file path. ROI volume output name
- out_transform
Character; file path. Transformation matrix in_file to out_roi output name
- .cwd
Working directory override.
- .env
Named character vector of environment variables.
- .engine
Execution engine override.
- .profile
Runtime profile override.
- dry_run
Logical; preview command without executing.
- echo
Logical; echo stdout/stderr in real time.