Use fslmeants for printing the average timeseries (intensities) to
Usage
ni_fsl_image_meants(
in_file,
args = NULL,
eig = NULL,
mask = NULL,
nobin = NULL,
order = 1,
out_file = NULL,
show_all = NULL,
spatial_coord = NULL,
transpose = NULL,
use_mm = NULL,
.cwd = NULL,
.env = NULL,
.engine = NULL,
.profile = NULL,
dry_run = FALSE,
echo = interactive()
)Arguments
- in_file
Character; file path. input file for computing the average timeseries Required.
- args
Character. Additional parameters to the command
- eig
Logical. calculate Eigenvariate(s) instead of mean (output will have 0 mean)
- mask
Character; file path. input 3D mask
- nobin
Logical. do not binarise the mask for calculation of Eigenvariates
- order
Integer. select number of Eigenvariates
- out_file
Character; file path. name of output text matrix
- show_all
Logical. show all voxel time series (within mask) instead of averaging
- spatial_coord
Character or numeric vector.
requested spatial coordinate (instead of mask) - transpose
Logical. output results in transpose format (one row per voxel/mean)
- use_mm
Logical. use mm instead of voxel coordinates (for -c option)
- .cwd
Working directory override.
- .env
Named character vector of environment variables.
- .engine
Execution engine override.
- .profile
Runtime profile override.
- dry_run
Logical; preview command without executing.
- echo
Logical; echo stdout/stderr in real time.