This program strips skull and other outer non-brain tissue and
Usage
ni_freesurfer_watershed_skull_strip(
in_file,
out_file,
args = NULL,
brain_atlas = NULL,
t1 = NULL,
transform = NULL,
.cwd = NULL,
.env = NULL,
.engine = NULL,
.profile = NULL,
dry_run = FALSE,
echo = interactive()
)Arguments
- in_file
Character; file path. input volume Required.
- out_file
Character; file path. output volume Required.
- args
Character. Additional parameters to the command
- brain_atlas
Character; file path
- t1
Logical. specify T1 input volume (T1 grey value = 110)
- transform
Character; file path. undocumented
- .cwd
Working directory override.
- .env
Named character vector of environment variables.
- .engine
Execution engine override.
- .profile
Runtime profile override.
- dry_run
Logical; preview command without executing.
- echo
Logical; echo stdout/stderr in real time.