Use unpacksdcmdir to convert dicom files
Usage
ni_freesurfer_unpack_sdicom_dir(
config,
run_info,
seq_config,
source_dir,
args = NULL,
dir_structure = NULL,
log_file = NULL,
no_info_dump = NULL,
no_unpack_err = NULL,
output_dir = NULL,
scan_only = NULL,
spm_zeropad = NULL,
.cwd = NULL,
.env = NULL,
.engine = NULL,
.profile = NULL,
dry_run = FALSE,
echo = interactive()
)Arguments
- config
Character; file path. specify unpacking rules in file Required.
- run_info
Character or numeric vector. runno subdir format name : spec unpacking rules on cmdline Required.
- seq_config
Character; file path. specify unpacking rules based on sequence Required.
- source_dir
Character; directory path. directory with the DICOM files Required.
- args
Character. Additional parameters to the command
- dir_structure
Character; one of: "fsfast", "generic". unpack to specified directory structures
- log_file
Character; file path. explicitly set log file
- no_info_dump
Logical. do not create infodump file
- no_unpack_err
Logical. do not try to unpack runs with errors
- output_dir
Character; directory path. top directory into which the files will be unpacked
- scan_only
Character; file path. only scan the directory and put result in file
- spm_zeropad
Integer. set frame number zero padding width for SPM
- .cwd
Working directory override.
- .env
Named character vector of environment variables.
- .engine
Execution engine override.
- .profile
Runtime profile override.
- dry_run
Logical; preview command without executing.
- echo
Logical; echo stdout/stderr in real time.