Transform a surface file from one subject to another via a spherical registration.
Usage
ni_freesurfer_surface_transform(
hemi,
source_annot_file,
source_file,
source_subject,
target_subject,
args = NULL,
out_file = NULL,
reshape = NULL,
reshape_factor = NULL,
source_type = NULL,
target_ico_order = NULL,
target_type = NULL,
.cwd = NULL,
.env = NULL,
.engine = NULL,
.profile = NULL,
dry_run = FALSE,
echo = interactive()
)Arguments
- hemi
Character; one of: "lh", "rh". hemisphere to transform Required.
- source_annot_file
Character; file path. surface annotation file Required.
- source_file
Character; file path. surface file with source values Required.
- source_subject
Character. subject id for source surface Required.
- target_subject
Character. subject id of target surface Required.
- args
Character. Additional parameters to the command
- out_file
Character; file path. surface file to write
- reshape
Logical. reshape output surface to conform with Nifti
- reshape_factor
Integer. number of slices in reshaped image
- source_type
Character; one of: "cor", "mgh", "mgz", "minc", "analyze", "analyze4d", "spm", "afni", "brik", "bshort", "bfloat", "sdt", "outline", "otl", "gdf", "nifti1", "nii", "niigz". source file format
- target_ico_order
Character; one of: "1", "2", "3", "4", "5", "6", "7". order of the icosahedron if target_subject is 'ico'
- target_type
Character; one of: "cor", "mgh", "mgz", "minc", "analyze", "analyze4d", "spm", "afni", "brik", "bshort", "bfloat", "sdt", "outline", "otl", "gdf", "nifti1", "nii", "niigz", "gii". output format
- .cwd
Working directory override.
- .env
Named character vector of environment variables.
- .engine
Execution engine override.
- .profile
Runtime profile override.
- dry_run
Logical; preview command without executing.
- echo
Logical; echo stdout/stderr in real time.