Use FreeSurfer mris_preproc to prepare a group of contrasts for
Usage
ni_freesurfer_mris_preproc(
hemi,
target,
args = NULL,
fsgd_file = NULL,
fwhm = NULL,
fwhm_source = NULL,
num_iters = NULL,
num_iters_source = NULL,
out_file = NULL,
proj_frac = NULL,
smooth_cortex_only = NULL,
source_format = NULL,
subject_file = NULL,
subjects = NULL,
surf_area = NULL,
surf_dir = NULL,
surf_measure = NULL,
surf_measure_file = NULL,
vol_measure_file = NULL,
.cwd = NULL,
.env = NULL,
.engine = NULL,
.profile = NULL,
dry_run = FALSE,
echo = interactive()
)Arguments
- hemi
Character; one of: "lh", "rh". hemisphere for source and target Required.
- target
Character. target subject name Required.
- args
Character. Additional parameters to the command
- fsgd_file
Character; file path. specify subjects using fsgd file
- fwhm
Numeric. smooth by fwhm mm on the target surface
- fwhm_source
Numeric. smooth by fwhm mm on the source surface
- num_iters
Integer. niters : smooth by niters on the target surface
- num_iters_source
Integer. niters : smooth by niters on the source surface
- out_file
Character; file path. output filename
- proj_frac
Numeric. projection fraction for vol2surf
- smooth_cortex_only
Logical. only smooth cortex (ie, exclude medial wall)
- source_format
Character. source format
- subject_file
Character; file path. file specifying subjects separated by white space
- subjects
Character or numeric vector. subjects from who measures are calculated
- surf_area
Character. Extract vertex area from subject/surf/hemi.surfname to use as input.
- surf_dir
Character. alternative directory (instead of surf)
- surf_measure
Character. Use subject/surf/hemi.surf_measure as input
- surf_measure_file
Character or numeric vector. file alternative to surfmeas, still requires list of subjects
- vol_measure_file
Character or numeric vector. list of volume measure and reg file tuples
- .cwd
Working directory override.
- .env
Named character vector of environment variables.
- .engine
Execution engine override.
- .profile
Runtime profile override.
- dry_run
Logical; preview command without executing.
- echo
Logical; echo stdout/stderr in real time.