Uses Freesurfer's mri_tessellate to create surfaces by tessellating a given input volume
Usage
ni_freesurfer_mri_tessellate(
in_file,
label_value,
args = NULL,
out_file = NULL,
tesselate_all_voxels = NULL,
use_real_RAS_coordinates = NULL,
.cwd = NULL,
.env = NULL,
.engine = NULL,
.profile = NULL,
dry_run = FALSE,
echo = interactive()
)Arguments
- in_file
Character; file path. Input volume to tessellate voxels from. Required.
- label_value
Integer. Label value which to tessellate from the input volume. (integer, if input is "filled.mgz" volume, 127 is rh, 255 is lh) Required.
- args
Character. Additional parameters to the command
- out_file
Character; file path. output filename or True to generate one
- tesselate_all_voxels
Logical. Tessellate the surface of all voxels with different labels
- use_real_RAS_coordinates
Logical. Saves surface with real RAS coordinates where c_(r,a,s) != 0
- .cwd
Working directory override.
- .env
Named character vector of environment variables.
- .engine
Execution engine override.
- .profile
Runtime profile override.
- dry_run
Logical; preview command without executing.
- echo
Logical; echo stdout/stderr in real time.