This program positions the tessellation of the cortical surface at the
Usage
ni_freesurfer_make_surfaces(
hemisphere,
in_filled,
in_orig,
in_wm,
subject_id,
args = NULL,
fix_mtl = NULL,
in_T1 = NULL,
in_aseg = NULL,
longitudinal = NULL,
maximum = NULL,
mgz = NULL,
no_white = NULL,
noaparc = NULL,
orig_pial = NULL,
orig_white = NULL,
white = NULL,
white_only = NULL,
.cwd = NULL,
.env = NULL,
.engine = NULL,
.profile = NULL,
dry_run = FALSE,
echo = interactive()
)Arguments
- hemisphere
Character; one of: "lh", "rh". Hemisphere being processed Required.
- in_filled
Character; file path. Implicit input file filled.mgz Required.
- in_orig
Character; file path. Implicit input file
.orig Required. - in_wm
Character; file path. Implicit input file wm.mgz Required.
- subject_id
Character. Subject being processed Required.
- args
Character. Additional parameters to the command
- fix_mtl
Logical. Undocumented flag
- in_T1
Character; file path. Input brain or T1 file
- in_aseg
Character; file path. Input segmentation file
- longitudinal
Logical. No documentation (used for longitudinal processing)
- maximum
Numeric. No documentation (used for longitudinal processing)
- mgz
Logical. No documentation. Direct questions to analysis-bugs@nmr.mgh.harvard.edu
- no_white
Logical. Undocumented flag
- noaparc
Logical. No documentation. Direct questions to analysis-bugs@nmr.mgh.harvard.edu
- orig_pial
Character; file path. Specify a pial surface to start with
- orig_white
Character; file path. Specify a white surface to start with
- white
Character. White surface name
- white_only
Logical. Undocumented flag
- .cwd
Working directory override.
- .env
Named character vector of environment variables.
- .engine
Execution engine override.
- .profile
Runtime profile override.
- dry_run
Logical; preview command without executing.
- echo
Logical; echo stdout/stderr in real time.