This program creates a transform in lta format
Usage
ni_freesurfer_em_register(
in_file,
template,
args = NULL,
mask = NULL,
nbrspacing = NULL,
out_file = NULL,
skull = NULL,
transform = NULL,
.cwd = NULL,
.env = NULL,
.engine = NULL,
.profile = NULL,
dry_run = FALSE,
echo = interactive()
)Arguments
- in_file
Character; file path. in brain volume Required.
- template
Character; file path. template gca Required.
- args
Character. Additional parameters to the command
- mask
Character; file path. use volume as a mask
- nbrspacing
Integer. align to atlas containing skull setting unknown_nbr_spacing = nbrspacing
- out_file
Character; file path. output transform
- skull
Logical. align to atlas containing skull (uns=5)
- transform
Character; file path. Previously computed transform
- .cwd
Working directory override.
- .env
Named character vector of environment variables.
- .engine
Execution engine override.
- .profile
Runtime profile override.
- dry_run
Logical; preview command without executing.
- echo
Logical; echo stdout/stderr in real time.