Compute surface-wise gray/white contrast
Usage
ni_freesurfer_contrast(
annotation,
cortex,
hemisphere,
orig,
rawavg,
subject_id,
thickness,
white,
args = NULL,
.cwd = NULL,
.env = NULL,
.engine = NULL,
.profile = NULL,
dry_run = FALSE,
echo = interactive()
)Arguments
- annotation
Character; file path. Input annotation file must be <subject_id>/label/
.aparc.annot Required. - cortex
Character; file path. Input cortex label must be <subject_id>/label/
.cortex.label Required. - hemisphere
Character; one of: "lh", "rh". Hemisphere being processed Required.
- orig
Character; file path. Implicit input file mri/orig.mgz Required.
- rawavg
Character; file path. Implicit input file mri/rawavg.mgz Required.
- subject_id
Character. Subject being processed Required.
- thickness
Character; file path. Input file must be <subject_id>/surf/?h.thickness Required.
- white
Character; file path. Input file must be <subject_id>/surf/
.white Required. - args
Character. Additional parameters to the command
- .cwd
Working directory override.
- .env
Named character vector of environment variables.
- .engine
Execution engine override.
- .profile
Runtime profile override.
- dry_run
Logical; preview command without executing.
- echo
Logical; echo stdout/stderr in real time.