Generates a multi-dimensional talairach transform from a gca file and talairach.lta file
Usage
ni_freesurfer_ca_register(
in_file,
A = NULL,
align = NULL,
args = NULL,
invert_and_save = NULL,
l_files = NULL,
levels = NULL,
mask = NULL,
no_big_ventricles = NULL,
out_file = NULL,
template = NULL,
transform = NULL,
.cwd = NULL,
.env = NULL,
.engine = NULL,
.profile = NULL,
dry_run = FALSE,
echo = interactive()
)Arguments
- in_file
Character; file path. The input volume for CARegister Required.
- A
Integer. undocumented flag used in longitudinal processing
- align
Character. Specifies when to perform alignment
- args
Character. Additional parameters to the command
- invert_and_save
Logical. Invert and save the .m3z multi-dimensional talaraich transform to x, y, and z .mgz files
- l_files
Character or numeric vector. undocumented flag used in longitudinal processing
- levels
Integer. defines how many surrounding voxels will be used in interpolations, default is 6
- mask
Character; file path. Specifies volume to use as mask
- no_big_ventricles
Logical. No big ventricles
- out_file
Character; file path. The output volume for CARegister
- template
Character; file path. The template file in gca format
- transform
Character; file path. Specifies transform in lta format
- .cwd
Working directory override.
- .env
Named character vector of environment variables.
- .engine
Execution engine override.
- .profile
Runtime profile override.
- dry_run
Logical; preview command without executing.
- echo
Logical; echo stdout/stderr in real time.