This program creates a normalized volume using the brain volume and an
Usage
ni_freesurfer_ca_normalize(
atlas,
in_file,
transform,
args = NULL,
control_points = NULL,
long_file = NULL,
mask = NULL,
out_file = NULL,
.cwd = NULL,
.env = NULL,
.engine = NULL,
.profile = NULL,
dry_run = FALSE,
echo = interactive()
)Arguments
- atlas
Character; file path. The atlas file in gca format Required.
- in_file
Character; file path. The input file for CANormalize Required.
- transform
Character; file path. The transform file in lta format Required.
- args
Character. Additional parameters to the command
- control_points
Character; file path. File name for the output control points
- long_file
Character; file path. undocumented flag used in longitudinal processing
- mask
Character; file path. Specifies volume to use as mask
- out_file
Character; file path. The output file for CANormalize
- .cwd
Working directory override.
- .env
Named character vector of environment variables.
- .engine
Execution engine override.
- .profile
Runtime profile override.
- dry_run
Logical; preview command without executing.
- echo
Logical; echo stdout/stderr in real time.