Label subcortical structures based in GCA model.
Usage
ni_freesurfer_ca_label(
in_file,
out_file,
template,
transform,
align = NULL,
args = NULL,
aseg = NULL,
in_vol = NULL,
intensities = NULL,
label = NULL,
no_big_ventricles = NULL,
prior = NULL,
relabel_unlikely = NULL,
.cwd = NULL,
.env = NULL,
.engine = NULL,
.profile = NULL,
dry_run = FALSE,
echo = interactive()
)Arguments
- in_file
Character; file path. Input volume for CALabel Required.
- out_file
Character; file path. Output file for CALabel Required.
- template
Character; file path. Input template for CALabel Required.
- transform
Character; file path. Input transform for CALabel Required.
- align
Logical. Align CALabel
- args
Character. Additional parameters to the command
- aseg
Character; file path. Undocumented flag. Autorecon3 uses ../mri/aseg.presurf.mgz as input file
- in_vol
Character; file path. set input volume
- intensities
Character; file path. input label intensities file(used in longitudinal processing)
- label
Character; file path. Undocumented flag. Autorecon3 uses ../label/{hemisphere}.cortex.label as input file
- no_big_ventricles
Logical. No big ventricles
- prior
Numeric. Prior for CALabel
- relabel_unlikely
Character or numeric vector. Reclassify voxels at least some std devs from the mean using some size Gaussian window
- .cwd
Working directory override.
- .env
Named character vector of environment variables.
- .engine
Execution engine override.
- .profile
Runtime profile override.
- dry_run
Logical; preview command without executing.
- echo
Logical; echo stdout/stderr in real time.