Create a bidsappr-based BIDS App pre-configured with niflowr

Scaffolds a BIDS App using bidsappr::new_app() and creates a template app.R with niflowr integration. The generated app includes example usage of niflowr functions and can be customized with tool-specific examples.

Usage

ni_bids_app(path, app_name = basename(path), tools = NULL)

Arguments

path

Directory path where the app will be created.

app_name

Name of the BIDS App. Default: basename of path.

tools

Optional character vector of spec IDs (e.g., c("fsl.bet", "ants.registration")) to include as commented-out examples in the generated app.

Value

Invisibly returns the path to the created app directory.

Examples

if (FALSE) { # \dontrun{
# Create a basic BIDS App
ni_bids_app("~/my_bids_app", app_name = "MyApp")

# Create an app with tool examples
ni_bids_app("~/my_bids_app", tools = c("fsl.bet", "ants.registration"))
} # }