Warps an image from one space to another
Usage
ni_ants_warp_image_multi_transform(
input_image,
transformation_series,
args = NULL,
dimension = 3,
output_image = NULL,
reference_image = NULL,
reslice_by_header = NULL,
tightest_box = NULL,
use_bspline = NULL,
use_nearest = NULL,
.cwd = NULL,
.env = NULL,
.engine = NULL,
.profile = NULL,
dry_run = FALSE,
echo = interactive()
)Arguments
- input_image
Character; file path. image to apply transformation to (generally a coregistered functional) Required.
- transformation_series
Character or numeric vector. transformation file(s) to be applied Required.
- args
Character. Additional parameters to the command
- dimension
Character; one of: "3", "2". image dimension (2 or 3)
- output_image
Character; file path. name of the output warped image
- reference_image
Character; file path. reference image space that you wish to warp INTO
- reslice_by_header
Logical. Uses orientation matrix and origin encoded in reference image file header. Not typically used with additional transforms
- tightest_box
Logical. computes tightest bounding box (overridden by reference_image if given)
- use_bspline
Logical. Use 3rd order B-Spline interpolation
- use_nearest
Logical. Use nearest neighbor interpolation
- .cwd
Working directory override.
- .env
Named character vector of environment variables.
- .engine
Execution engine override.
- .profile
Runtime profile override.
- dry_run
Logical; preview command without executing.
- echo
Logical; echo stdout/stderr in real time.