Registration using a symmetric image normalization method (SyN).
Usage
ni_ants_registration_syn_quick(
fixed_image,
moving_image,
output_prefix,
args = NULL,
dimension = 3,
histogram_bins = 32,
num_threads = 1,
precision_type = "double",
random_seed = NULL,
spline_distance = 26,
transform_type = "s",
use_histogram_matching = NULL,
.cwd = NULL,
.env = NULL,
.engine = NULL,
.profile = NULL,
dry_run = FALSE,
echo = interactive()
)Arguments
- fixed_image
Character or numeric vector. Fixed image or source image or reference image Required.
- moving_image
Character or numeric vector. Moving image or target image Required.
- output_prefix
Character. A prefix that is prepended to all output files Required.
- args
Character. Additional parameters to the command
- dimension
Character; one of: "3", "2". image dimension (2 or 3)
- histogram_bins
Integer. histogram bins for mutual information in SyN stage (default = 32)
- num_threads
Integer. Number of threads (default = 1)
- precision_type
Character; one of: "double", "float". precision type (default = double)
- random_seed
Integer. fixed random seed
- spline_distance
Integer. spline distance for deformable B-spline SyN transform (default = 26)
- transform_type
Character; one of: "s", "t", "r", "a", "sr", "b", "br". Transform type * t: translation * r: rigid * a: rigid + affine * s: rigid + affine + deformable syn (default) * sr: rigid + deformable syn * b: rigid + affine + deformable b-spline syn * br: rigid + deformable b-spline syn
- use_histogram_matching
Logical. use histogram matching
- .cwd
Working directory override.
- .env
Named character vector of environment variables.
- .engine
Execution engine override.
- .profile
Runtime profile override.
- dry_run
Logical; preview command without executing.
- echo
Logical; echo stdout/stderr in real time.