Calculates the cortical thickness from an anatomical image
Usage
ni_ants_laplacian_thickness(
input_gm,
input_wm,
args = NULL,
dT = NULL,
output_image = NULL,
prior_thickness = NULL,
smooth_param = NULL,
sulcus_prior = NULL,
tolerance = NULL,
.cwd = NULL,
.env = NULL,
.engine = NULL,
.profile = NULL,
dry_run = FALSE,
echo = interactive()
)Arguments
- input_gm
Character; file path. gray matter segmentation image Required.
- input_wm
Character; file path. white matter segmentation image Required.
- args
Character. Additional parameters to the command
- dT
Numeric. Time delta used during integration (defaults to 0.01)
- output_image
Character. name of output file
- prior_thickness
Numeric. Prior thickness (defaults to 500)
- smooth_param
Numeric. Sigma of the Laplacian Recursive Image Filter (defaults to 1)
- sulcus_prior
Numeric. Positive floating point number for sulcus prior. Authors said that 0.15 might be a reasonable value
- tolerance
Numeric. Tolerance to reach during optimization (defaults to 0.001)
- .cwd
Working directory override.
- .env
Named character vector of environment variables.
- .engine
Execution engine override.
- .profile
Runtime profile override.
- dry_run
Logical; preview command without executing.
- echo
Logical; echo stdout/stderr in real time.