Convert scalar images to RGB.
Usage
ni_ants_convert_scalar_image_to_rgb(
colormap,
dimension,
input_image,
maximum_input,
minimum_input,
args = NULL,
custom_color_map_file = "none",
mask_image = "none",
maximum_RGB_output = 255,
minimum_RGB_output = 0,
output_image = "rgb.nii.gz",
.cwd = NULL,
.env = NULL,
.engine = NULL,
.profile = NULL,
dry_run = FALSE,
echo = interactive()
)Arguments
- colormap
Character; one of: "grey", "red", "green", "blue", "copper", "jet", "hsv", "spring", "summer", "autumn", "winter", "hot", "cool", "overunder", "custom". Select a colormap Required.
- dimension
Character; one of: "3", "2". image dimension (2 or 3) Required.
- input_image
Character; file path. Main input is a 3-D grayscale image. Required.
- maximum_input
Integer. maximum input Required.
- minimum_input
Integer. minimum input Required.
- args
Character. Additional parameters to the command
- custom_color_map_file
Character. custom color map file
- mask_image
Character or numeric vector. mask image
- maximum_RGB_output
Integer
- minimum_RGB_output
Integer
- output_image
Character. rgb output image
- .cwd
Working directory override.
- .env
Named character vector of environment variables.
- .engine
Execution engine override.
- .profile
Runtime profile override.
- dry_run
Logical; preview command without executing.
- echo
Logical; echo stdout/stderr in real time.