ANTS wrapper for registration of images
Usage
ni_ants_ants(
fixed_image,
metric,
metric_weight,
moving_image,
output_transform_prefix,
radius,
transformation_model,
affine_gradient_descent_option = NULL,
args = NULL,
dimension = NULL,
mi_option = NULL,
number_of_affine_iterations = NULL,
number_of_iterations = NULL,
regularization = NULL,
smoothing_sigmas = NULL,
subsampling_factors = NULL,
use_histogram_matching = TRUE,
.cwd = NULL,
.env = NULL,
.engine = NULL,
.profile = NULL,
dry_run = FALSE,
echo = interactive()
)Arguments
- fixed_image
Character or numeric vector. image to which the moving image is warped Required.
- metric
Character or numeric vector Required.
- metric_weight
Character or numeric vector. the metric weight(s) for each stage. The weights must sum to 1 per stage. Required.
- moving_image
Character or numeric vector. image to apply transformation to (generally a coregisteredfunctional) Required.
- output_transform_prefix
Character Required.
- radius
Character or numeric vector. radius of the region (i.e. number of layers around a voxel/pixel) that is used for computing cross correlation Required.
- transformation_model
Character; one of: "Diff", "Elast", "Exp", "Greedy Exp", "SyN" Required.
- affine_gradient_descent_option
Character or numeric vector
- args
Character. Additional parameters to the command
- dimension
Character; one of: "3", "2". image dimension (2 or 3)
- mi_option
Character or numeric vector
- number_of_affine_iterations
Character or numeric vector
- number_of_iterations
Character or numeric vector
- regularization
Character; one of: "Gauss", "DMFFD"
- smoothing_sigmas
Character or numeric vector
- subsampling_factors
Character or numeric vector
- use_histogram_matching
Logical
- .cwd
Working directory override.
- .env
Named character vector of environment variables.
- .engine
Execution engine override.
- .profile
Runtime profile override.
- dry_run
Logical; preview command without executing.
- echo
Logical; echo stdout/stderr in real time.