Create a 3D dataset from 2D image files using AFNI to3d command
Usage
ni_afni_to3_d(
in_folder,
args = NULL,
assumemosaic = NULL,
datatype = NULL,
filetype = NULL,
funcparams = NULL,
out_file = NULL,
skipoutliers = NULL,
.cwd = NULL,
.env = NULL,
.engine = NULL,
.profile = NULL,
dry_run = FALSE,
echo = interactive()
)Arguments
- in_folder
Character; directory path. folder with DICOM images to convert Required.
- args
Character. Additional parameters to the command
- assumemosaic
Logical. assume that Siemens image is mosaic
- datatype
Character; one of: "short", "float", "byte", "complex". set output file datatype
- filetype
Character; one of: "spgr", "fse", "epan", "anat", "ct", "spct", "pet", "mra", "bmap", "diff", "omri", "abuc", "fim", "fith", "fico", "fitt", "fift", "fizt", "fict", "fibt", "fibn", "figt", "fipt", "fbuc". type of datafile being converted
- funcparams
Character. parameters for functional data
- out_file
Character; file path. output image file name
- skipoutliers
Logical. skip the outliers check
- .cwd
Working directory override.
- .env
Named character vector of environment variables.
- .engine
Execution engine override.
- .profile
Runtime profile override.
- dry_run
Logical; preview command without executing.
- echo
Logical; echo stdout/stderr in real time.