Calculates number of 'outliers' at each time point of a
Usage
ni_afni_outlier_count(
in_file,
args = NULL,
autoclip = FALSE,
automask = FALSE,
fraction = FALSE,
interval = FALSE,
legendre = FALSE,
mask = NULL,
outliers_file = NULL,
polort = NULL,
qthr = 0.001,
.cwd = NULL,
.env = NULL,
.engine = NULL,
.profile = NULL,
dry_run = FALSE,
echo = interactive()
)Arguments
- in_file
Character; file path. input dataset Required.
- args
Character. Additional parameters to the command
- autoclip
Logical. clip off small voxels
- automask
Logical. clip off small voxels
- fraction
Logical. write out the fraction of masked voxels which are outliers at each timepoint
- interval
Logical. write out the median + 3.5 MAD of outlier count with each timepoint
- legendre
Logical. use Legendre polynomials
- mask
Character; file path. only count voxels within the given mask
- outliers_file
Character; file path. output image file name
- polort
Integer. detrend each voxel timeseries with polynomials
- qthr
Character. indicate a value for q to compute alpha
- .cwd
Working directory override.
- .env
Named character vector of environment variables.
- .engine
Execution engine override.
- .profile
Runtime profile override.
- dry_run
Logical; preview command without executing.
- echo
Logical; echo stdout/stderr in real time.