Performs degree centrality on a dataset using a given maskfile
Usage
ni_afni_degree_centrality(
in_file,
args = NULL,
autoclip = NULL,
automask = NULL,
mask = NULL,
oned_file = NULL,
out_file = NULL,
polort = NULL,
sparsity = NULL,
thresh = NULL,
.cwd = NULL,
.env = NULL,
.engine = NULL,
.profile = NULL,
dry_run = FALSE,
echo = interactive()
)Arguments
- in_file
Character; file path. input file to 3dDegreeCentrality Required.
- args
Character. Additional parameters to the command
- autoclip
Logical. Clip off low-intensity regions in the dataset
- automask
Logical. Mask the dataset to target brain-only voxels
- mask
Character; file path. mask file to mask input data
- oned_file
Character. output filepath to text dump of correlation matrix
- out_file
Character; file path. output image file name
- polort
Integer
- sparsity
Numeric. only take the top percent of connections
- thresh
Numeric. threshold to exclude connections where corr <= thresh
- .cwd
Working directory override.
- .env
Named character vector of environment variables.
- .engine
Execution engine override.
- .profile
Runtime profile override.
- dry_run
Logical; preview command without executing.
- echo
Logical; echo stdout/stderr in real time.