Apply one or more AFNI affine rows to a source series on an explicit master grid.
Usage
ni_afni_allineate_apply(
in_file,
in_matrix,
master,
out_file,
final_interpolation,
floatize = TRUE,
no_pad = FALSE,
zclip = FALSE,
overwrite = NULL,
.cwd = NULL,
.env = NULL,
.engine = NULL,
.profile = NULL,
dry_run = FALSE,
echo = interactive()
)Arguments
- in_file
Character; file path. Source image or timeseries to resample. Required.
- in_matrix
Character; file path. AFNI base-to-source affine rows to apply. Required.
- master
Character; file path. Image defining the complete output sampling grid. Required.
- out_file
Character; file path. Destination image or timeseries. Required.
- final_interpolation
Character; one of: "NN", "linear", "cubic", "quintic", "wsinc5". Interpolation used only for final output sampling. Required.
- floatize
Logical. Write output in floating-point format.
- no_pad
Logical. Disable base-image zero padding.
- zclip
Logical. Replace negative source and base values with zero.
- overwrite
Logical. Permit AFNI to overwrite an existing output dataset.
- .cwd
Working directory override.
- .env
Named character vector of environment variables.
- .engine
Execution engine override.
- .profile
Runtime profile override.
- dry_run
Logical; preview command without executing.
- echo
Logical; echo stdout/stderr in real time.