Package index • fmristore

All functions

H5ClusterExperiment-class: H5ClusterExperiment Class

H5ClusterExperiment(): Constructor for H5ClusterExperiment Objects

H5ClusterRun-class: H5ClusterRun Class

H5ClusterRun(): Constructor for H5ClusterRun Objects

H5ClusterRunSummary-class: H5ClusterRunSummary Class

H5ClusterRunSummary(): Constructor for H5ClusterRunSummary Objects

H5NeuroVec-class: H5NeuroVec Class

H5NeuroVec(): H5NeuroVec Constructor

H5NeuroVol-class: H5NeuroVol Class

H5NeuroVol(): H5NeuroVol Constructor

LabeledVolumeSet-class: LabeledVolumeSet Class

LatentNeuroVec-class: LatentNeuroVec Class

LatentNeuroVec(): Create a Latent Space Representation of Neuroimaging Data

as.array(<LatentNeuroVec>): Convert LatentNeuroVec to Array

as.data.frame(): Convert to Data Frame

as.matrix(): Convert to Matrix

as_h5(<NeuroVol>): Convert a NeuroVol to HDF5 Format (as_h5 Method)

as_h5(): Generic function to convert R objects to HDF5 format

basis(): Get the basis matrix (temporal components)

`$`(<H5ClusterExperiment>): Accessor Methods for H5ClusterExperiment Access Slots/Properties using `$`

close(): Close an Object

cluster_metadata(<H5ClusterExperiment>): Get cluster metadata

cluster_metadata(): Get cluster metadata

clusters(): Get the cluster map object

concat(<LatentNeuroVec>,<LatentNeuroVec>): Concatenate LatentNeuroVec Objects

`[`(<H5ClusterRun>,<ANY>,<missing>,<ANY>) `[`(<H5ClusterRunSummary>,<ANY>,<ANY>,<ANY>) `[`(<H5ClusterRunSummary>,<ANY>,<missing>,<ANY>) `[`(<H5NeuroVec>,<numeric>,<numeric>,<ANY>) `[[`(<LabeledVolumeSet>,<numeric>) `[[`(<LabeledVolumeSet>,<character>) `[[`(<LatentNeuroVec>,<numeric>) `[`(<LatentNeuroVec>,<numeric>,<numeric>,<ANY>) `[`(<LatentNeuroVec>,<ANY>,<ANY>,<ANY>): Extract data from H5ClusterRun with missing j parameter

h5file(<H5ClusteredArray>) h5file(<H5ClusterExperiment>): Get the HDF5 file object via generic

h5file(): Get the HDF5 file object

loadings(): Get the loadings matrix (spatial components)

make_run_full(): Constructor for H5ClusterRun Objects

make_run_summary(): Constructor for H5ClusterRunSummary Objects

map(): Get the index map volume

mask(): Get the mask volume

matrix_concat(): Concatenate Cluster Summary Matrices Across Runs (Generic)

n_scans(<H5ClusterExperiment>): Get number of scans

n_scans(): Get the number of scans

neurovecseq_to_h5(): Convert NeuroVecSeq to HDF5

offset(): Get the offset vector

read_labeled_vec(): Read a Labeled Neuroimaging Volume Set from HDF5

scan_metadata(<H5ClusterExperiment>): Get scan metadata

scan_metadata(): Get scan metadata

scan_names(<H5ClusterExperiment>): Get scan names

scan_names(): Get the scan names

series(): Extract Time Series Data

series_concat(): Concatenate Voxel Time Series Across Runs (Generic)

show(<H5NeuroVec>): Display an H5NeuroVec object

show(<H5NeuroVol>): Show Method for H5NeuroVol

show(<LabeledVolumeSet>): show method for LabeledVolumeSet

show(<H5ClusterRun>) show(<H5ClusterRunSummary>) show(<H5ClusterExperiment>) show(<LatentNeuroVec>): Show Methods for H5Cluster Objects

`[`(<H5ClusterRun>,<ANY>,<ANY>,<ANY>): Subset an H5ClusterRun Object

`[`(<H5NeuroVol>,<ANY>,<ANY>,<ANY>): 3D bracket subsetting for H5NeuroVol (handles partial arguments)

`[`(<LabeledVolumeSet>,<ANY>,<ANY>,<ANY>): 4D Array-like subsetting for LabeledVolumeSet

validate_latent_file(): Validate HDF5 File Against Latent Spec

write_clustered_experiment_h5(): Write Clustered Experiment Data to HDF5

write_labeled_vec(): Write a NeuroVec to an HDF5 file with NIfTI-like quaternions

write_vec(<LatentNeuroVec>,<character>,<missing>,<missing>): Write LatentNeuroVec to HDF5 File