Plot a group examination — plot.gds

The default action plane places model surprise on the horizontal axis and influence on the requested group estimand on the vertical axis. Secondary views show subject-by-diagnostic summaries or the residual geometry. When subject is supplied, the retained observed, expected, predictive-residual, and deletion maps are shown for that subject.

Usage

# S3 method for class 'gds_examination'
plot(
  x,
  subject = NULL,
  type = c("action", "heatmap", "embedding"),
  contrast = NULL,
  estimand = NULL,
  group_by = NULL,
  assays = NULL,
  slice = NULL,
  ...
)

Arguments

x: A gds_examination.
subject: Optional retained subject ID. Supplying it selects the linked subject view regardless of type.
type: One of "action", "heatmap", or "embedding".
contrast: Optional contrast subset.
estimand: Optional estimand subset.
group_by: Optional column in subject_data mapped to point shape.
assays: Optional selected-subject assays to display.
slice: Optional one-based axial slice for voxel-space subject maps.
...: Reserved for future plot controls.

Value

A ggplot object.