Tidy long-form export for GDS — gds_to

Public wrapper around the internal tidy frame builder used by CSV/Parquet exporters. Returns a data.frame; if you prefer a tibble, wrap with tibble::as_tibble().

Usage

gds_to_tibble(gds, assays = NULL, drop_na = FALSE, include_col_data = FALSE)

Arguments

gds: A realised GDS object
assays: Character vector of assay names to include (default: all assays in the GDS)
drop_na: If TRUE, drop rows with all-NA assays
include_col_data: If TRUE, join columns from col_data

Value

A data.frame in long form with columns sample, subject, contrast, plus one column per requested assay.